johnegarza/ichor:v0.2

Manifest digest

sha256:d121c97c7ffa33e71fb2fcdc04d90f10576fc09f2dcdddb0d6ac67a3eee43ea7

OS/ARCH

linux/amd64

Compressed size

644.66 MB

Last pushed

over 7 years by johnegarza

Type

Image

Manifest digest

sha256:d121c97c7ffa33e71fb2fcdc04d90f10576fc09f2dcdddb0d6ac67a3eee43ea7

Image Layers

Image Layers

1ADD file ... in / 41.74 MB

2/bin/sh -c set -xe &&848 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*526 B

4/bin/sh -c mkdir -p /run/systemd168 B

5CMD ["/bin/bash"]0 B

6/bin/sh -c echo cache bust0 B

7/bin/sh -c apt-get update17.69 MB

8/bin/sh -c apt-get install -y6.72 MB

9/bin/sh -c apt-get install -y394.27 KB

10/bin/sh -c apt-get install -y51.72 MB

11/bin/sh -c apt-get install -y11.28 MB

12/bin/sh -c apt-get install -y13.03 MB

13/bin/sh -c apt-get install -y1.04 MB

14/bin/sh -c apt-get install -y34.6 MB

15/bin/sh -c apt-get install -y504.12 KB

16/bin/sh -c apt-get install -y798.1 KB

17/bin/sh -c apt-get install -y22.67 MB

18/bin/sh -c apt-get install -y21.03 MB

19/bin/sh -c apt-get install -y4.94 MB

20/bin/sh -c aptitude install -y1.63 MB

21/bin/sh -c apt-get install -y698.45 KB

22/bin/sh -c apt-get install -y1.45 MB

23/bin/sh -c apt-get install -y953.02 KB

24ARG R_VERSION0 B

25ARG BUILD_DATE0 B

26ENV BUILD_DATE=2017-06-200 B

27ENV R_VERSION=3.5.30 B

28/bin/sh -c cd /tmp/ &&138.36 MB

29ADD file ... in /tmp/rpackages.R 200 B

30/bin/sh -c R -f /tmp/rpackages.R129.92 MB

31/bin/sh -c apt-get update160.08 KB

32/bin/sh -c apt-get install -y13.78 MB

33/bin/sh -c git clone https://github.com/broadinstitute/ichorCNA.git14.56 MB

34/bin/sh -c cd ichorCNA &&22.83 KB

35/bin/sh -c apt-get install -y15.21 MB

36/bin/sh -c Rscript -e "source('https://bioconductor.org/biocLite.R');12.87 MB

37/bin/sh -c R CMD INSTALL6.1 MB

38COPY file:b360656679ce86debc2b0a196cf85fa8daf9761214f385a93d9be2d4cbce17ce in /usr/local/bin/runIchorCNA.R 6.38 KB

39COPY file:5235189234244d64246efe0cad836b38a9bce11cef122339b5d69068045f7cd1 in /opt/files/all_sequences.fa.fai 33.56 KB

40COPY file:78a2442c2bb94d047e80c8d432c34ab1ae025e7f8cfc381e8a187c3448514fbc in /opt/files/all_sequences.fa.bed.gz 406 B

41COPY file:2f9d97778b11abe0f720eb75a0b814eed0206616b749d90ef146635608f27cca in /opt/files/all_sequences.fa.bed.gz.tbi 1.77 KB

42COPY file:2d7336836d1fab33a3840a3f536d853f77c22fb23e7ec611d6fdf09df2d93c8f in /opt/files/ChromoSeq.hg38.bed 6.16 KB

43

COPY file:b4d1f3a1dcc5aa03aaae2d62e60fb756989124b816e68fecca3c107f192283b4 in /opt/files/nextera_hg38_500kb_median_normAutosome_median.rds_median.n9.rds

536.66 KB

44WORKDIR /usr/local0 B

45/bin/sh -c apt-get install -y7.83 MB

46/bin/sh -c git clone https://github.com/arq5x/bedtools2.git69.74 MB

47/bin/sh -c apt-get install -y726.43 KB

48/bin/sh -c mkdir -p /tmp/ucsc2.03 MB

Command

ADD file:a65e0467dbedc0992151651c136374c16f65d9905eac9d04d0925039ada64e4c in /