Sign inSign up

pipecraft/nextits:1.1.0

Index digest

sha256:355911e184a7e475802ba5769f4e2865873320a6c4a34d0a227065d418d939ec

OS/ARCH

linux/amd64

Compressed size

1.97 GB

Last pushed

7 months by metsoja

Type

Image

Manifest digest

sha256:eba2a79a3e36a026dbafaef90a832c2ef6168f87954c931e2c9b77b9d81e6c0a

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=24.040 B
5ADD file ... in / 28.34 MB
6CMD ["/bin/bash"]0 B
7ENV R_VERSION=4.5.10 B
8ENV R_HOME=/usr/local/lib/R0 B
9ENV TZ=Etc/UTC0 B
10COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
11RUN /bin/sh -c /rocker_scripts/install_R_source.sh #289.42 MB
12ENV CRAN=https://p3m.dev/cran/__linux__/noble/latest0 B
13ENV LANG=en_US.UTF-80 B
14COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB
15COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.5 KB
16RUN /bin/sh -c if grep27.17 MB
17CMD ["R"]0 B
18COPY scripts /rocker_scripts # buildkit20.77 KB
19ENV LANG=C.UTF-80 B
20ENV LC_ALL=C.UTF-80 B
21ENV SHELL=/bin/bash0 B
22LABEL [email protected]0 B
23LABEL org.opencontainers.image.version=1.1.00 B
24RUN /bin/sh -c apt-get update48.68 MB
25RUN /bin/sh -c install2.r --error150.38 MB
26RUN /bin/sh -c R -e189.09 MB
27RUN /bin/sh -c install2.r --error13.91 MB
28RUN /bin/sh -c mkdir -p143.62 MB
29RUN /bin/sh -c cd /opt/software335 B
30RUN /bin/sh -c /opt/software/conda/bin/mamba install759.91 MB
31RUN /bin/sh -c cd /opt/software8.02 MB
32RUN /bin/sh -c git clone18.34 KB
33RUN /bin/sh -c wget https://github.com/shenwei356/rush/releases/download/v0.7.0/rush_linux_amd64.tar.gz3.33 MB
34RUN /bin/sh -c wget https://github.com/shenwei356/brename/releases/download/v2.14.0/brename_linux_amd64.tar.gz3.06 MB
35RUN /bin/sh -c git clone94.51 KB
36COPY /usr/local/cargo/bin/runiq /opt/software/conda/bin/runiq # buildkit1.21 MB
37COPY /usr/local/cargo/bin/sd /opt/software/conda/bin/sd # buildkit1011.05 KB
38RUN /bin/sh -c cd /opt/software4.86 MB
39RUN /bin/sh -c cd /opt/software17.46 MB
40ENV PATH=/opt/software/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41RUN /bin/sh -c groupadd -g3.55 KB
42RUN /bin/sh -c chmod 755177 B
43RUN /bin/sh -c echo '#!/bin/bash'263 B
44USER nextits0 B
45WORKDIR /tmp/nextits32 B
46ENTRYPOINT ["/opt/software/entrypoint.sh"]0 B
47ENV R_VERSION=4.5.10 B
48RUN /bin/sh -c echo "===114 B
49ARG NEXTITS_VERSION=1.1.00 B
50ARG NEXTFLOW_VERSION=25.10.40 B
51ENV NEXTITS_DIR=/opt/pipelines/NextITS0 B
52ENV NXF_HOME=/opt/software/conda/bin0 B
53USER root0 B
54RUN |2 NEXTITS_VERSION=1.1.0 NEXTFLOW_VERSION=25.10.4 /bin/sh327.13 MB
55USER nextits0 B

Command

 ARG RELEASE